ChIP-seq and ATAC-seq Analysis
Our robust ChIP-Seq analysis pipeline includes raw data QC and clean up, reads mapping, differential binding analysis, peak calling and annotation, motif analysis and Gene ontology/ KEGG pathway enrichment analysis
Standard workflow:
- Quality assessment
- Reads mapping
- Peak calling
- Differential binding analysis
Customized downstream analysis:
- Annotation: Clinvar/HMGD/Annovar/SnpEff/Functional impact/Population Allele Frequency
- peak annotation
- Copy number variation
- Gene ontology /KEGG pathway enrichment analysis
- Genomic footprint